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MICCAI 2026 - CALHippo: A reproducible pipeline for cell-type-resolved instance segmentation and density-based mesoscale reconstruction of the human hippocampus.
6 starsPython
Mapping the Human Hippocampus, Sort Of
by ettore_c·Jun 25, 2026·2 points·0 comments
AI Analysis
●●SolidNiche GemBig Brain
MICCAI-accepted pipeline bridging microscopic cells to macroscopic brain architecture.
Strengths
- •Multiscale workflow connecting HR cell segmentation to LR density prediction with 3D point cloud output
- •Published at MICCAI 2026 with preprint and reproducible codebase
- •Supports both PyTorch and TensorFlow with Hugging Face model hosting
Weaknesses
- •Extremely narrow audience—only useful for hippocampus research specifically
- •No Docker container or one-click deployment for non-Python researchers
Category
Target Audience
Neuroscience researchers, medical imaging specialists
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